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Custom Tracks     SNP hide dense full SNPs at chromosome Density hide dense full SNP Density in KiloBase Coverage hide dense full Coverage over chromosome SNP(091118) hide dense squish pack full SNPs at chromosome(version of 2009/11/18) Density(091118) hide dense full SNP density in kilobase(Data version of 2009/11/18) Coverage(091118) hide dense full Coverage over chromosome(Data version of 2009/11/18)

Mapping and Sequencing Tracks     Base Position hide dense full Chromosome position in bases. (Clicks here zoom in 3x) Assembly hide dense squish pack full Assembly from Fragments Gap hide dense squish pack full Gap Locations GC Percent hide dense full GC Percent in 5-Base Windows Quality Scores hide dense full Cow Sequencing Quality Scores Short Match hide dense squish pack full Perfect Matches to Short Sequence (AAAAA) Restr Enzymes hide dense squish pack full Restriction Enzymes from REBASE

Genes and Gene Prediction Tracks     RefSeq Genes hide dense squish pack full RefSeq Genes MGC Genes hide dense squish pack full Mammalian Gene Collection Full ORF mRNAs TransMap... hide show TransMap Alignments      TransMap UCSC      hide dense squish pack full TransMap UCSC Gene Mappings      TransMap RefGene      hide dense squish pack full TransMap RefSeq Gene Mappings      TransMap mRNA      hide dense squish pack full TransMap GenBank mRNA Mappings Ensembl Genes hide dense squish pack full Ensembl Gene Predictions N-SCAN hide dense squish pack full N-SCAN Gene Predictions Genscan Genes hide dense squish pack full Genscan Gene Predictions Human Proteins hide dense squish pack full Human Proteins Mapped by Chained tBLASTn

mRNA and EST Tracks     Cow mRNAs hide dense squish pack full Cow mRNAs from GenBank Spliced ESTs hide dense squish pack full Cow ESTs That Have Been Spliced Cow ESTs hide dense squish pack full Cow ESTs Including Unspliced Other mRNAs hide dense squish pack full Non-Cow mRNAs from GenBank

Expression and Regulation     CpG Islands hide dense squish pack full CpG Islands (Islands < 300 Bases are Light Green)

Comparative Genomics     Conservation hide dense squish pack full 5-Way Multiz Alignment & Conservation Most Conserved hide dense squish pack full PhastCons Conserved Elements, 5-way Vertebrate Multiz Alignment Platypus Chain hide dense squish pack full Platypus (Mar. 2007/ornAna1) Chained Alignments Platypus Net hide dense full Platypus (Mar. 2007/ornAna1) Alignment Net Mouse Chain hide dense squish pack full Mouse (July 2007/mm9) Chained Alignments Mouse Net hide dense full Mouse (July 2007/mm9) Alignment Net Human Chain hide dense squish pack full Human (Mar. 2006/hg18) Chained Alignments Human Net hide dense full Human (Mar. 2006/hg18) Alignment Net Dog Chain hide dense squish pack full Dog (May 2005/canFam2) Chained Alignments Dog Net hide dense full Dog (May 2005/canFam2) Alignment Net

Variation and Repeats     RepeatMasker hide dense full Repeating Elements by RepeatMasker Interrupted Rpts hide dense squish pack full Fragments of Interrupted Repeats Joined by RepeatMasker ID Simple Repeats hide dense squish pack full Simple Tandem Repeats by TRF