NGRC_Rice_Omachi Genome Browser
NGRC_Rice_Omachi is a database that provides information of SNPs and InDels between Oryza sativa L. cv. Omachi and Nipponbare genomes. We integrated the physical positions of Omachi sequence, including SNP and InDel information, into the annotated the Rice Annotation Project Database release 2 (http://rapdb.dna.affrc.go.jp/) in GBrowse, which is customized and maintained by the NODAI Genome Research Center (NGRC), Tokyo University of Agriculture.
Genome Browser
Publication
Yuko Arai-Kichise, Yuh Shiwa, Hideki Nagasaki, Kaworu Ebana, Hirofumi Yoshikawa, Masahiro Yano, Kyo Wakasa (2011) Discovery of Genome-wide DNA Polymorphisms in a Landrace Cultivar of Japonica Rice by Whole-genome Sequencing. Plant Cell Physiol. 52:274-282.
| SNP list |
Omachi_SNP_list_Chr1-Chr12.xls.zip (10.6 MB) |
|
| Insertion list |
Omachi_Insertion_list.xls.zip (1.2 MB) |
|
| Deletion list |
Omachi_Deletion_list.xls.zip (1.4 MB) |
|
| Gene list of including SNPs |
Non-synonymousSNP_annotation.xls.zip (57 KB) |
|
| Gene list of including InDels |
InDel_annotation.xls.zip (29 KB) |
Cite us
Please contact us (nodaigc[at mark]nodai.ac.jp) when you use any information in this site. If you use any data in this site in your recent work that will be published in a journal or on the website, please cite our publications. In addition to the relevant paper, please include a reference to our website in your manuscript [http://www.nodai-genome.org/oryza_sativa_en.html].
Contact information
E-mail : nodaigc [at mark] nodai.ac.jp